The first output from PDBe-KB are the aggregated views of proteins, which present all the structural data available for a specific protein. This includes structural coverage, ligand interaction sites, protein-protein contacts, and functional annotations from a range of external databases.
Banco de Datos de la proteína en Europa– Base de Conocimiento (PDBe-KB, por sus siblas en inglés Protein Data Bank in Europe – Knowledge Base) es un recurso integrado, conducido por la comunidad, de acceso abierto, cuya misión es colocar datos de la estructura macromolecular en su contexto biológico y para hacerla accesible a la comunidad científica con el fin de apoyar la
An unprecedented number of scientific efforts URL template, https://pdbe-kb.org/proteins/%u. Citation, [PubMed:31584092][DOI :10.1093/nar/gkz853]. Link type, Implicit. Category, 3D structure databases PDBe-KB - new data resource for protein structure and function… 21 March 2019 .
pdbe-kb Protein Data Bank in Europe – Knowledge Base (PDBe-KB) is a community-driven, open-access, integrated resource whose mission is to place macromolecular structure data in their biological context and to make them accessible to the scientific community in order to support fundamental and translational research and education. It is part of the European Bioinformatics Institute (EMBL-EBI), … PDBe-KB i: Search Chemistry databases. DrugBank i: DB03600, Capric acid DB00788, Naproxen: Miscellaneous databases. EvolutionaryTrace i: Q51911: Family and domain databases. InterPro i: View protein in InterPro IPR040912, DUF5633 IPR035152, GA-like IPR019948, Gram-positive_anchor IPR009063, Ig/albumin-bd_sf IPR019931 Phrases that contain the word pdbe-kb:. Help Advanced Feedback Android iPhone/iPad API Blog Privacy Copyright © 2021 Datamuse PDBe-KB: a community-driven resource for structural and functional annotations.
SWISS-MODEL Repository entry for P22435 (NCAP_I68A4), Nucleoprotein. Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
24, 2015. PDBe-KB: 29 Jan 2021 Protein, Structures determined, PDBe-KB COVID-19 Data Portal ORF8, 2, https ://www.ebi.ac.uk/pdbe/pdbe-kb/protein/P0DTC8.
PMP has reached its end of life and no longer provides data. Thank you for your support and trust for more than 10 years! For protein structures of UniProt sequences please refer to SWISS-MODEL Repository (updated weekly for select core species), ModBase, RCSB PDB Protein Feature View or PDBe-KB.
4,4 tn visningar · 5 mars. 0:21 · Dynamic Proteins kb. , d p pit eå. , s lu tju st er ad .d oc. Sammanfattning. Piteå kommun och Piteå risk deposition med avseende på kvicksilver och PBDE samt av I Rissanen · 2020 · Citerat av 1 — pdbe/entry/emdb/EMD- Zaki SR, Greer PW, Coffield LM, Goldsmith CS, Nolte KB, Foucar K, Feddersen RM, Zumwalt RE, Miller GL, Khan.
Each PDB registry is encoded as PDBe-KB entry which possesses entities linked with that entry by relationships. A distinct PDB entity can be a macromolecule, bound ligand or a water. Full schema of the PDBe-KB may be found here. Basic form: (:ENTRY) - [:HAS_ENTITTY] -> (:ENTITY) Example:
access PDBe-KB pages for your protein of interest identify which PDB entries are best for your needs analyse ligand and protein-protein interaction sites compare external functional annotations with data from known PDB structures extract large volumes of relevant data …
FunPDBe Validator client that can parse and validate FunPDBe JSON files
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File information. Structured data. Captions Edit. English.
You can find P2Rank predictions among Functional anotations / Predicted ligend binding sites, see for example www.ebi.ac.uk/pdbe/pdbe-kb/proteins/2etx#annotations . Publications
PMP has reached its end of life and no longer provides data.
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2 Jul 2020 Base (PDBe-KB). This new community-driven resource. direct and programmatic access. collates annotations and predictions for structure data in the PDB archive . It also links to the UniProtKB. At the end of 2019, EMBL-EBI&nb
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330662 Ensembl ENSG00000150760 ENSMUSG00000058325 UniProt Q14185 Q8BUR4 mRNA 序列 NM_001290223 NM_001380 NM_001033420 蛋白序列 NP_001277152 NP_001371 NP_001364472 NP_001364473 NP_001364475 NP_001364476 NP_001364477 NP_001364479 NP_001364482 NP_001364483 NP_001364485 NP_001364487 NP_001364489 NP_001364490 NP_001028592 基因 …
Protein Data Bank in Europe – Knowledge Base (PDBe-KB) is a community-driven, open-access, integrated resource whose mission is to place macromolecular structure data in their biological context and to make them accessible to the scientific community in order to support fundamental and translational research and education.
New PDBe-KB COVID-19 Macromolecular Structure Data Portal An unprecedented number of scientific efforts are taking place worldwide in order to help combat the new coronavirus epidemic (COVID-19). PDBe - KB provides an overview of all the structure information available in the PDB for Human Fatty acid-binding protein, adipocyte PDBe - KB provides Aldehyde dehydrogenase 4 family, member A1 (666 words) [view diff] exact match in snippet view article find links to article The first output from PDBe-KB are the aggregated views of proteins, which present all the structural data available for a specific protein. This includes structural coverage, ligand interaction sites, protein-protein contacts, and functional annotations from a range of external databases. PDBe-KB (Protein Data Bank in Europe - Knowledge Base) is a community-driven resource managed by the PDBe team, collating functional annotations and predicti pdbe-kb; funpdbe; funpdbe-schema; Details; F. funpdbe-schema Project ID: 525 Star 0 80 Commits; 1 Branch; 0 Tags; 195 KB Files; 215 KB Storage; master. Switch branch PDBe-KB provides a structure-oriented view for the entire protein. 60533 Ensembl ENSG00000120217 ENSMUSG00000016496 UniProt Q9NZQ7 Q9EP73 RefSeq (mRNA) NM_001314029 NM_001267706 NM_014143 NM_021893 RefSeq (protein) NP_001254635 NP_001300958 NP_054862 NP_068693 Location (UCSC) Chr 9: 5.45 – 5.47 Mb Chr 19: 29.37 – 29.39 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse Programmed death-ligand 1 (PD-L1) also known as cluster of differentiation 274